STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000046672Single-stranded DNA binding protein 2. (375 aa)    
Predicted Functional Partners:
ldb1
LIM domain binding 1.
    
 
 0.675
ENSCHAP00000039961
annotation not available
    
 
 0.675
ENSCHAP00000056531
LIM domain binding 2b.
    
 
 0.675
LHX3
LIM homeobox 3.
    
 
 0.510
ENSCHAP00000017315
LIM homeobox 4.
    
 
 0.510
LHX4
LIM homeobox 4.
    
 
 0.510
LOC105899422
RING finger protein 11-like.
   
    0.487
rnf11
Ring finger protein 11.
   
    0.487
ENSCHAP00000018198
annotation not available
   
    0.470
ENSCHAP00000048832
LIM domain only 3.
    
 
 0.463
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.