STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000046785FCF1 rRNA-processing protein. (227 aa)    
Predicted Functional Partners:
ENSCHAP00000008762
annotation not available
   
 0.999
pdcd11
Programmed cell death 11.
   
 0.999
ENSCHAP00000014119
NOP58 ribonucleoprotein homolog (yeast).
   
 0.999
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.999
ENSCHAP00000018854
NOP14 nucleolar protein homolog (yeast).
   
 0.999
ENSCHAP00000019409
Nucleolar complex associated 4 homolog.
   
 0.999
ENSCHAP00000026317
UTP3 small subunit processome component.
   
 0.999
rps9
Ribosomal protein S9.
   
 0.999
rcl1
RNA terminal phosphate cyclase like 1.
   
 0.999
ENSCHAP00000030315
Ddb1 and cul4 associated factor 13.
   
 0.999
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.