STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000046806General transcription factor IIA, 2. (121 aa)    
Predicted Functional Partners:
ENSCHAP00000005063
General transcription factor IIA, 1.
    
 0.998
gtf2b
General transcription factor IIB.
   
 0.998
ENSCHAP00000035732
General transcription factor IIE, polypeptide 2, beta.
   
 0.998
taf11
TATA-box binding protein associated factor 11.
    
 0.997
gtf2f1
General transcription factor IIF subunit 1.
    
 0.997
ENSCHAP00000026594
General transcription factor IIH, polypeptide 3.
    
 0.997
ENSCHAP00000048775
General transcription factor IIA, 1-like.
    
 0.997
ENSCHAP00000002381
Excision repair cross-complementation group 3.
    
 0.996
ckm
ERCC excision repair 2, TFIIH core complex helicase subunit.
    
 0.995
LOC105889985
General transcription factor IIH subunit 2-like.
   
 0.995
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.