ENSCHAP00000046820 protein (Clupea harengus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCHAP00000046820

NTPase, KAP family P-loop domain containing 1. (749 aa)

Predicted Functional Partners:

leo1

0.734

LOC105900866

0.702

crk

0.673

crkl

0.673

ENSCHAP00000039104

0.673

ENSCHAP00000006817

0.648

ENSCHAP00000026367

0.648

ift81

0.648

rap1b

0.634

LOC105901888

0.634

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000006817	ENSCHAP00000046820	ENSCHAP00000006817	ENSCHAP00000046820	annotation not available	NTPase, KAP family P-loop domain containing 1.	0.648
ENSCHAP00000026367	ENSCHAP00000046820	ENSCHAP00000026367	ENSCHAP00000046820	Rho family GTPase 2.	NTPase, KAP family P-loop domain containing 1.	0.648
ENSCHAP00000039104	ENSCHAP00000046820	ENSCHAP00000039104	ENSCHAP00000046820	annotation not available	NTPase, KAP family P-loop domain containing 1.	0.673
ENSCHAP00000039104	LOC105901888	ENSCHAP00000039104	ENSCHAP00000040823	annotation not available	Ras-related protein Rap-1A-like.	0.641
ENSCHAP00000039104	crk	ENSCHAP00000039104	ENSCHAP00000015939	annotation not available	CRK proto-oncogene, adaptor protein.	0.850
ENSCHAP00000039104	crkl	ENSCHAP00000039104	ENSCHAP00000023105	annotation not available	CRK like proto-oncogene, adaptor protein.	0.851
ENSCHAP00000039104	rap1b	ENSCHAP00000039104	ENSCHAP00000014734	annotation not available	RAP1B, member of RAS oncogene family.	0.641
ENSCHAP00000046820	ENSCHAP00000006817	ENSCHAP00000046820	ENSCHAP00000006817	NTPase, KAP family P-loop domain containing 1.	annotation not available	0.648
ENSCHAP00000046820	ENSCHAP00000026367	ENSCHAP00000046820	ENSCHAP00000026367	NTPase, KAP family P-loop domain containing 1.	Rho family GTPase 2.	0.648
ENSCHAP00000046820	ENSCHAP00000039104	ENSCHAP00000046820	ENSCHAP00000039104	NTPase, KAP family P-loop domain containing 1.	annotation not available	0.673
ENSCHAP00000046820	LOC105900866	ENSCHAP00000046820	ENSCHAP00000005891	NTPase, KAP family P-loop domain containing 1.	Xenotropic and polytropic retrovirus receptor 1 homolog.	0.702
ENSCHAP00000046820	LOC105901888	ENSCHAP00000046820	ENSCHAP00000040823	NTPase, KAP family P-loop domain containing 1.	Ras-related protein Rap-1A-like.	0.634
ENSCHAP00000046820	crk	ENSCHAP00000046820	ENSCHAP00000015939	NTPase, KAP family P-loop domain containing 1.	CRK proto-oncogene, adaptor protein.	0.673
ENSCHAP00000046820	crkl	ENSCHAP00000046820	ENSCHAP00000023105	NTPase, KAP family P-loop domain containing 1.	CRK like proto-oncogene, adaptor protein.	0.673
ENSCHAP00000046820	ift81	ENSCHAP00000046820	ENSCHAP00000054265	NTPase, KAP family P-loop domain containing 1.	Intraflagellar transport 81.	0.648
ENSCHAP00000046820	leo1	ENSCHAP00000046820	ENSCHAP00000004560	NTPase, KAP family P-loop domain containing 1.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.734
ENSCHAP00000046820	rap1b	ENSCHAP00000046820	ENSCHAP00000014734	NTPase, KAP family P-loop domain containing 1.	RAP1B, member of RAS oncogene family.	0.634
LOC105900866	ENSCHAP00000046820	ENSCHAP00000005891	ENSCHAP00000046820	Xenotropic and polytropic retrovirus receptor 1 homolog.	NTPase, KAP family P-loop domain containing 1.	0.702
LOC105901888	ENSCHAP00000039104	ENSCHAP00000040823	ENSCHAP00000039104	Ras-related protein Rap-1A-like.	annotation not available	0.641
LOC105901888	ENSCHAP00000046820	ENSCHAP00000040823	ENSCHAP00000046820	Ras-related protein Rap-1A-like.	NTPase, KAP family P-loop domain containing 1.	0.634