STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000046927Serine and arginine rich splicing factor 6a. (361 aa)    
Predicted Functional Partners:
ncbp2
Nuclear cap binding protein subunit 2.
    
 0.913
ENSCHAP00000047530
SRSF protein kinase 1a.
    
 0.894
srsf3
Serine and arginine rich splicing factor 3.
   
0.878
cdc5l
Cell division cycle 5 like.
   
 0.877
LOC105898141
SRSF protein kinase 1-like.
    
 0.877
cstf3
Cleavage stimulation factor subunit 3.
   
 0.874
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.865
LOC105903575
pre-mRNA 3'-end-processing factor FIP1-like.
   
 0.850
ENSCHAP00000006979
annotation not available
  
0.849
LOC105901301
Serine/arginine-rich splicing factor 2-like.
  
0.849
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.