STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105890731Ras-related protein Rab-7a-like. (211 aa)    
Predicted Functional Partners:
CHML
Rab proteins geranylgeranyltransferase component A 2-like.
    
 0.969
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.954
rilp
Rab interacting lysosomal protein.
    
 0.936
vps26a
VPS26, retromer complex component A.
    
 0.924
vps29
VPS29 retromer complex component.
    
 0.909
ENSCHAP00000047826
Dynein, cytoplasmic 1, light intermediate chain 2.
   
 0.899
vps26b
VPS26, retromer complex component B.
    
 0.898
ENSCHAP00000016077
FYVE and coiled-coil domain containing 1a.
    
 0.895
ENSCHAP00000018291
FYVE and coiled-coil domain containing 1b.
    
 0.895
ENSCHAP00000055668
Rubicon autophagy regulator.
    
 
 0.871
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.