STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spg7SPG7 matrix AAA peptidase subunit, paraplegin. (811 aa)    
Predicted Functional Partners:
phb
Prohibitin.
  
 0.964
vdac1
Voltage dependent anion channel 1.
   
 0.964
PHB2
Prohibitin 2.
  
 0.946
ENSCHAP00000039421
Complement component 5.
    
  0.924
plekha7
Pleckstrin homology domain containing A7.
    
  0.889
mrpl2
Mitochondrial ribosomal protein L2.
  
 
 0.886
LOC105906143
ATP-dependent zinc metalloprotease YME1L1-like.
  
 
0.878
ENSCHAP00000019642
YME1-like 1a.
  
 
0.878
ENSCHAP00000030827
Peptidylprolyl isomerase Aa (cyclophilin A).
  
 
 0.875
PPIF
Peptidylprolyl isomerase F.
  
 
 0.875
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.