STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
foxl1Forkhead box L1. (401 aa)    
Predicted Functional Partners:
suox
Sulfite oxidase.
     
 0.727
ENSCHAP00000016180
Forkhead box C1a.
  
0.659
ENSCHAP00000011383
annotation not available
   
 0.614
LOC105893332
Histone-binding protein RBBP7.
   
 0.614
ENSCHAP00000033351
TNF receptor-associated factor 6.
   
 0.599
TRAF6
TNF receptor-associated factor 6-like.
   
 0.599
ENSCHAP00000024681
E1A binding protein p300 a.
    
 0.584
ENSCHAP00000025501
CREB binding protein a.
    
 0.584
ENSCHAP00000031900
E1A binding protein p300 b.
    
 0.584
ENSCHAP00000045259
Centromere protein P.
    
 0.584
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.