STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000047463annotation not available (928 aa)    
Predicted Functional Partners:
ENSCHAP00000038625
OS9 endoplasmic reticulum lectin.
   
 0.960
ENSCHAP00000049811
Endoplasmic reticulum lectin 1.
   
 0.960
ENSCHAP00000001290
Autocrine motility factor receptor a.
   
 0.959
ENSCHAP00000052133
Synovial apoptosis inhibitor 1, synoviolin.
   
 0.959
rnf139
Ring finger protein 139.
    
 0.910
LOC105891268
Transitional endoplasmic reticulum ATPase-like.
   
 0.901
SPATA5
Spermatogenesis associated 5.
   
 0.901
LOC105901173
Transitional endoplasmic reticulum ATPase.
   
 0.901
fam8a1
Family with sequence similarity 8 member A1.
    
 0.879
ube2g2
Ubiquitin conjugating enzyme E2 G2.
    
 0.876
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.