STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000047600Proteasome 20S subunit beta 11b. (330 aa)    
Predicted Functional Partners:
ENSCHAP00000002433
Proteasome 20S subunit beta 4.
   
 0.995
psmb2
Proteasome 20S subunit beta 2.
   
 0.995
psma3
Proteasome 20S subunit alpha 3.
   
 0.995
psmb1
Proteasome 20S subunit beta 1.
   
0.994
ENSCHAP00000005340
Proteasome 20S subunit beta 3.
   
 0.994
ENSCHAP00000022879
UBX domain protein 7.
    
  0.994
psma5
Proteasome 20S subunit alpha 5.
   
 0.994
psma1
Proteasome 20S subunit alpha 1.
   
 0.991
PSMA4
Proteasome 20S subunit alpha 4.
   
 0.991
ENSCHAP00000016300
annotation not available
   
 0.983
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.