STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000047660Transmembrane protein 135. (502 aa)    
Predicted Functional Partners:
pxmp4
Peroxisomal membrane protein 4.
      
 0.541
man2a1
Mannosidase alpha class 2A member 1.
      
 0.453
ENSCHAP00000004831
Sphingomyelin phosphodiesterase acid like 3B.
      
 0.437
timm17a
Translocase of inner mitochondrial membrane 17A.
      
 0.429
timm17b
Translocase of inner mitochondrial membrane 17B.
      
 0.429
LOC105890049
ATPase family AAA domain-containing protein 1-A-like.
      
 0.410
ENSCHAP00000031493
MPV17 mitochondrial membrane protein-like 2.
      
 0.400
ENSCHAP00000041075
annotation not available
      
 0.400
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.