STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105894116Magnesium-dependent phosphatase 1-like. (170 aa)    
Predicted Functional Partners:
pdcd6ip
Programmed cell death 6 interacting protein.
    
 0.993
ENSCHAP00000032748
Protein tyrosine phosphatase, non-receptor type 23, b.
    
 0.977
ENSCHAP00000047182
Protein tyrosine phosphatase, non-receptor type 23, a.
    
 0.977
ENSCHAP00000005325
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
    
 0.945
LOC105900785
Ubiquitin-conjugating enzyme E2 variant 3-like.
     
 0.943
ENSCHAP00000044860
Charged multivesicular body protein 7.
    
 0.943
LOC105892612
Vacuolar protein sorting-associated protein 37A-like.
     
 0.934
vps37c
VPS37C subunit of ESCRT-I.
     
 0.933
vps25
Vacuolar protein sorting 25 homolog.
     
 0.933
VPS37B
VPS37B subunit of ESCRT-I.
     
 0.933
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.