STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000047772Ddb1 and cul4 associated factor 17. (524 aa)    
Predicted Functional Partners:
ENSCHAP00000044410
Cullin 4B.
   
 0.963
ENSCHAP00000012285
Damage-specific DNA binding protein 1.
    
 0.948
DCAF1
DDB1 and CUL4 associated factor 1.
   
 
  0.934
ENSCHAP00000041408
Autophagy/beclin-1 regulator 1b.
   
 
  0.929
rbx1
Ring-box 1.
     
 0.926
ENSCHAP00000040260
Glomulin, FKBP associated protein a.
   
 
  0.924
dcaf8
DDB1 and CUL4 associated factor 8.
     
 0.924
DDA1
DET1 and DDB1 associated 1.
    
 0.903
ENSCHAP00000052831
DET1 and DDB1 associated 1.
    
 0.903
rnf7
Ring finger protein 7.
     
 0.823
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.