STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000047792Transmembrane p24 trafficking protein 1b. (234 aa)    
Predicted Functional Partners:
tmed10
Transmembrane p24 trafficking protein 10.
   
 
 0.758
TMED2
Transmembrane p24 trafficking protein 2.
   
 
0.609
ENSCHAP00000050937
Transmembrane p24 trafficking protein 2.
   
 
0.609
wnt6
Wnt family member 6.
   
  0.600
wnt1
Wnt family member 1.
    
  0.589
wnt8b
Wnt family member 8B.
    
  0.589
ENSCHAP00000004318
Wingless-type MMTV integration site family, member 16.
    
  0.589
wnt4
Wnt family member 4.
    
  0.589
wnt10b
Wnt family member 10B.
    
  0.570
ENSCHAP00000056246
Wingless-type MMTV integration site family, member 10a.
    
  0.570
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.