STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000047845CKLF-like MARVEL transmembrane domain containing 4. (221 aa)    
Predicted Functional Partners:
ENSCHAP00000047885
annotation not available
      
 0.542
CKLF
Chemokine like factor.
      
 0.540
ENSCHAP00000048556
CKLF-like MARVEL transmembrane domain containing 6.
    
 
0.534
polr2m
RNA polymerase II subunit M.
      
 0.517
ENSCHAP00000031133
Dynein, cytoplasmic 1, light intermediate chain 1.
 
    
 0.497
fam168b
Family with sequence similarity 168 member B.
      
 0.429
ENSCHAP00000047978
Brain expressed, associated with NEDD4, 1.
      
 0.424
ENSCHAP00000059039
NHS-like 2.
      
 0.418
ap1ar
Adaptor related protein complex 1 associated regulatory protein.
      
 0.414
ENSCHAP00000047826
Dynein, cytoplasmic 1, light intermediate chain 2.
 
    
 0.404
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.