STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105892066Probable histone deacetylase 1-B. (490 aa)    
Predicted Functional Partners:
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
 0.996
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
 0.996
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.984
ENSCHAP00000051493
Mortality factor 4 like 1.
   
 0.977
suds3
SDS3 homolog, SIN3A corepressor complex component.
    
 0.974
rb1
RB transcriptional corepressor 1.
   
 0.974
ENSCHAP00000020151
Inhibitor of growth family, member 1.
    
 0.973
ENSCHAP00000019849
Nuclear receptor corepressor 2.
    
 0.972
LOC105905879
methyl-CpG-binding domain protein 3-like.
    
 0.967
ENSCHAP00000062455
Lysine (K)-specific demethylase 1a.
   
 0.967
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.