STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000048207Phosphorylated adaptor for RNA export. (399 aa)    
Predicted Functional Partners:
ncbp2
Nuclear cap binding protein subunit 2.
   
 0.991
ENSCHAP00000052523
Serrate RNA effector molecule homolog (Arabidopsis).
   
 0.960
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.957
ENSCHAP00000002546
RAN, member RAS oncogene family.
    
 0.843
ran
RAN, member RAS oncogene family.
    
 0.843
ENSCHAP00000058406
Adhesion G protein-coupled receptor D1.
    
 0.783
pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.757
ENSCHAP00000054328
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
    
 
 0.753
ENSCHAP00000052183
Transmembrane protein 240b.
   
 
  0.662
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
   
 
  0.662
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.