STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dclre1bDNA cross-link repair 1B. (591 aa)    
Predicted Functional Partners:
ENSCHAP00000041304
annotation not available
    
 0.978
ENSCHAP00000058293
X-ray repair complementing defective repair in Chinese hamster cells 5.
    
 0.963
ENSCHAP00000028521
Cleavage and polyadenylation specific factor 1.
   
 0.956
xrcc6
X-ray repair cross complementing 6.
   
 0.954
ENSCHAP00000022226
Symplekin.
   
 0.949
ENSCHAP00000048221
WD repeat domain 82.
   
 0.934
ints4
Integrator complex subunit 4.
   
 0.930
LOC105903575
pre-mRNA 3'-end-processing factor FIP1-like.
    
 0.929
lig4
DNA ligase 4.
   
 0.913
pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.908
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.