STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000048319annotation not available (1040 aa)    
Predicted Functional Partners:
ENSCHAP00000038167
annotation not available
    
  0.946
ENSCHAP00000007365
RAD50 homolog, double strand break repair protein.
    
  0.901
pigv
Phosphatidylinositol glycan anchor biosynthesis class V.
   
 
 0.862
ENSCHAP00000039826
Phosphatidylinositol glycan anchor biosynthesis, class B.
     
 0.858
dpm1
Dolichyl-phosphate mannosyltransferase subunit 1, catalytic.
    
 0.839
alg3
ALG3 alpha-1,3- mannosyltransferase.
     
 0.824
dpm3
Dolichyl-phosphate mannosyltransferase subunit 3, regulatory.
     
 0.797
ENSCHAP00000054339
annotation not available
   
 
  0.793
ENSCHAP00000010009
Phosphatidylinositol glycan anchor biosynthesis, class A.
   
 
 0.717
ENSCHAP00000029046
Phosphatidylinositol glycan anchor biosynthesis, class W.
   
 
 0.717
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.