STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000048517Odr-4 GPCR localization factor homolog. (373 aa)    
Predicted Functional Partners:
ENSCHAP00000041174
Ufm1-specific peptidase 2.
   
 
 0.758
ENSCHAP00000054787
UFM1-specific peptidase 1 (non-functional).
   
 
 0.656
dpm1
Dolichyl-phosphate mannosyltransferase subunit 1, catalytic.
   
  
 0.568
txnl1
Thioredoxin like 1.
      
 0.528
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
      
 0.522
agps
Alkylglycerone phosphate synthase.
      
 0.516
ENSCHAP00000058633
Adaptor related protein complex 5 subunit zeta 1.
      
 0.499
alg5
ALG5 dolichyl-phosphate beta-glucosyltransferase.
   
  
 0.496
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.