STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000048662Plexin A1a. (1898 aa)    
Predicted Functional Partners:
ENSCHAP00000053646
Neuropilin 1a.
    
 0.794
ENSCHAP00000028648
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E.
    
 0.726
ENSCHAP00000008673
Semaphorin 7A.
    
 0.716
ENSCHAP00000001732
annotation not available
    
0.688
ENSCHAP00000011235
Si:ch211-113g11.6.
    
0.688
sema3g
Semaphorin 3G.
    
 0.686
SEMA4D
Semaphorin 4D.
    
 0.677
LOC105910853
semaphorin-4E-like.
    
0.665
ENSCHAP00000045785
Semaphorin 4e.
    
0.665
ENSCHAP00000005643
Rho guanine nucleotide exchange factor (GEF) 1b.
    
 0.657
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.