STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105893234Probable global transcription activator SNF2L1. (1033 aa)    
Predicted Functional Partners:
ENSCHAP00000026944
Bromodomain adjacent to zinc finger domain, 1A.
    
 0.994
pole3
DNA polymerase epsilon 3, accessory subunit.
    
 0.993
ENSCHAP00000055106
annotation not available
    
 0.987
chrac1
Chromatin accessibility complex subunit 1.
    
 0.982
ENSCHAP00000011383
annotation not available
   
 0.976
LOC105893332
Histone-binding protein RBBP7.
   
 0.976
ENSCHAP00000022284
Bromodomain adjacent to zinc finger domain, 1B.
   
 0.975
ENSCHAP00000010237
Bromodomain PHD finger transcription factor.
   
 0.971
BPTF
Bromodomain PHD finger transcription factor.
   
 0.971
RSF1
Remodeling and spacing factor 1.
   
 0.965
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.