STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000049566Solute carrier family 1 member 7b. (582 aa)    
Predicted Functional Partners:
ENSCHAP00000045887
Solute carrier family 6 member 14.
    
 0.584
slc1a1
Solute carrier family 1 member 1.
  
  
0.575
aldh7a1
Aldehyde dehydrogenase 7 family member A1.
   
 
 0.574
ENSCHAP00000040626
annotation not available
  
  
0.572
ENSCHAP00000000144
Solute carrier family 1 member 9.
  
 
 
0.563
LOC105889053
Excitatory amino acid transporter 2-like.
  
 
 
0.559
slc1a2
Solute carrier family 1 member 2.
  
 
 
0.559
ENSCHAP00000001703
Ureidopropionase, beta.
    
 0.551
ENSCHAP00000027679
Solute carrier family 1 member 3a.
  
  
 
0.548
SLC1A3
Solute carrier family 1 member 3.
  
  
 
0.544
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.