STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000049612annotation not available (840 aa)    
Predicted Functional Partners:
ENSCHAP00000056195
WD repeat domain 18.
   
 0.743
ENSCHAP00000006597
Pescadillo.
   
 0.697
tex10
Testis expressed 10.
   
 0.689
myl1
Myosin light chain 1.
   
 0.602
ENSCHAP00000031330
Rhomboid, veinlet-like 3 (Drosophila).
    
  0.599
RHBDL3
Rhomboid like 3.
    
  0.599
mylpf
Myosin light chain, phosphorylatable, fast skeletal muscle.
   
 0.590
ENSCHAP00000052115
Nucleolar protein 9.
   
 0.581
gnl2
G protein nucleolar 2.
   
 0.574
ENSCHAP00000025631
BOP1 ribosomal biogenesis factor.
   
  0.567
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.