STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000050007E2F transcription factor 5. (149 aa)    
Predicted Functional Partners:
rb1
RB transcriptional corepressor 1.
   
 0.977
ENSCHAP00000011414
Transcription factor Dp-1, a.
  
 0.974
ENSCHAP00000052975
Retinoblastoma-like 1 (p107).
   
 0.972
ENSCHAP00000042224
Transcription factor Dp-2.
  
 0.945
ENSCHAP00000041991
Lin-37 DREAM MuvB core complex component.
    
 0.893
lin54
Lin-54 DREAM MuvB core complex component.
   
 0.872
ENSCHAP00000053582
annotation not available
  
 
0.835
ENSCHAP00000040372
Lin-52 DREAM MuvB core complex component.
    
 0.813
ENSCHAP00000050019
E2F transcription factor 5.
 
   
  0.808
skp2
S-phase kinase associated protein 2.
    
 0.806
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.