STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000050109MyoD family inhibitor. (146 aa)    
Predicted Functional Partners:
ENSCHAP00000029953
Sprouty homolog 1, antagonist of FGF signaling (Drosophila).
    
 
 0.477
bbs2
Bardet-Biedl syndrome 2.
    
   0.461
ENSCHAP00000038295
Zinc finger, FYVE domain containing 26.
    
   0.450
znf148
Zinc finger protein 148.
  
 
   0.428
otx1
Orthodenticle homeobox 1.
    
   0.426
LOC105909393
Homeobox protein OTX1 A-like.
    
   0.426
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.