STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105906851Microphthalmia-associated transcription factor-like. (598 aa)    
Predicted Functional Partners:
ENSCHAP00000050133
annotation not available
  
 
0.900
ENSCHAP00000026943
Mitogen-activated protein kinase 3.
    
 0.863
mapk1
Mitogen-activated protein kinase 1.
    
 0.863
mitf
Melanocyte inducing transcription factor.
  
  
0.857
ENSCHAP00000036066
Mechanistic target of rapamycin kinase.
    
 
 0.678
ENSCHAP00000020871
annotation not available
    
 0.652
LOC105896734
14-3-3 protein zeta-like.
    
 0.652
LOC105901861
14-3-3 protein beta/alpha-1.
    
 0.652
sumo1
Small ubiquitin like modifier 1.
    
  0.634
ENSCHAP00000025825
annotation not available
    
 0.633
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.