STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rad54lRAD54 like. (742 aa)    
Predicted Functional Partners:
rad51
RAD51 recombinase.
  
 
 0.959
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.953
vac14
VAC14 component of PIKFYVE complex.
 
  
   0.907
ENSCHAP00000024514
WRN RecQ like helicase.
  
 
 0.905
ENSCHAP00000014529
annotation not available
  
 
 0.878
ENSCHAP00000054339
annotation not available
   
 0.878
ENSCHAP00000020926
RAD51 paralog D.
  
 
 0.870
ENSCHAP00000060454
DNA meiotic recombinase 1.
  
 
 0.862
ENSCHAP00000024435
RAD54 homolog B.
  
  
 
0.858
hltf
Helicase like transcription factor.
  
0.846
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.