STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105906560D-glucuronyl C5-epimerase-like. (591 aa)    
Predicted Functional Partners:
ENSCHAP00000056014
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3.
   
 0.918
ENSCHAP00000044478
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2b.
   
 0.912
ENSCHAP00000015188
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1b.
   
 0.910
ENSCHAP00000008676
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a.
   
 0.897
ENSCHAP00000041447
Glucuronic acid epimerase a.
  
  
 
0.850
ENSCHAP00000013178
Heparan sulfate 2-O-sulfotransferase 1b.
   
 
 0.619
ENSCHAP00000052398
annotation not available
    
 0.586
ENSCHAP00000062123
Solute carrier family 35 member B3.
      
 0.528
ENSCHAP00000042559
Xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I).
      
 0.522
ENSCHAP00000019656
Heparan sulfate 6-O-sulfotransferase 2.
    
 
 0.521
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.