STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RDH13Retinol dehydrogenase 13. (337 aa)    
Predicted Functional Partners:
ENSCHAP00000048178
Si:ch211-131k2.3.
   
 0.743
ENSCHAP00000033279
Cytochrome b5 reductase 4.
  
 0.725
ENSCHAP00000021307
3-oxoacyl-ACP synthase, mitochondrial.
  
 0.710
ENSCHAP00000045521
Malonyl CoA:ACP acyltransferase (mitochondrial).
  
 0.708
ENSCHAP00000000153
annotation not available
  
 0.674
FDX1
Ferredoxin 1.
  
 0.674
ENSCHAP00000021406
Ferredoxin 1b.
  
 0.674
ENSCHAP00000036226
Ferredoxin 1.
  
 0.674
LOC105910155
Adrenodoxin-like protein, mitochondrial.
  
 0.674
stoml1
Stomatin like 1.
  
 0.666
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.