STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000050594Si:ch211-188f17.1. (1620 aa)    
Predicted Functional Partners:
ENSCHAP00000030291
Ubiquitin B.
    
 0.913
rps27a
Ribosomal protein S27a.
    
 0.894
ENSCHAP00000025577
Proteasome 26S subunit, non-ATPase 4a.
    
 0.786
LOC105901691
26S proteasome non-ATPase regulatory subunit 4-like.
    
 0.786
ENSCHAP00000008497
Large tumor suppressor kinase 2.
    
 0.778
lats1
Large tumor suppressor kinase 1.
    
 0.778
ENSCHAP00000030857
annotation not available
    
 0.766
ENSCHAP00000003720
SMAD family member 7.
    
 0.761
ENSCHAP00000051903
SMAD family member 6b.
    
 0.761
ENSCHAP00000051935
SMAD family member 6b.
    
 0.761
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.