STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000050849Pentatricopeptide repeat domain 3. (596 aa)    
Predicted Functional Partners:
mrps11
Mitochondrial ribosomal protein S11.
    
 0.999
dap3
Death associated protein 3.
   
 0.999
mrps10
Mitochondrial ribosomal protein S10.
    
 0.999
mrps35
Mitochondrial ribosomal protein S35.
    
 0.999
ENSCHAP00000023606
Coiled-coil-helix-coiled-coil-helix domain containing 1.
    
 0.999
mrps9
Mitochondrial ribosomal protein S9.
   
 0.999
mrps15
Mitochondrial ribosomal protein S15.
   
 0.999
mrps27
Mitochondrial ribosomal protein S27.
   
 0.999
mrps14
Mitochondrial ribosomal protein S14.
    
 0.999
mrps23
Mitochondrial ribosomal protein S23.
    
 0.999
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.