STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000050945annotation not available (534 aa)    
Predicted Functional Partners:
ENSCHAP00000014898
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 
 0.754
ENSCHAP00000024235
RNA polymerase I and III subunit C.
    
  0.748
polr1e
RNA polymerase I subunit E.
    
 0.732
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
  0.727
ENSCHAP00000048215
TWIST neighbor.
    
 0.718
znrd1
Zinc ribbon domain containing 1.
    
 0.701
polr1a
RNA polymerase I subunit A.
    
 0.701
LOC105893216
Transcription initiation factor TFIID subunit 1-like.
    
 0.673
ENSCHAP00000007868
CD3e molecule, epsilon associated protein.
    
  0.665
ENSCHAP00000005390
General transcription factor IIH, polypeptide 5.
    
  0.661
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.