STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000051232Family with sequence similarity 199, X-linked. (389 aa)    
Predicted Functional Partners:
pdpk1
3-phosphoinositide dependent protein kinase 1.
    
   0.724
ENSCHAP00000058207
WD repeat domain 5.
    
   0.581
ENSCHAP00000014062
MAP3K12 binding inhibitory protein 1.
    
   0.447
wsb1
WD repeat and SOCS box containing 1.
    
   0.436
ENSCHAP00000013278
WD repeat and SOCS box containing 2.
    
   0.436
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.