STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cenpfCentromere protein F. (2810 aa)    
Predicted Functional Partners:
ENSCHAP00000046868
NDC80 kinetochore complex component.
   
 
 0.995
ENSCHAP00000040759
annotation not available
   
 0.987
ENSCHAP00000049093
annotation not available
   
 
 0.985
ENSCHAP00000058921
BUB1 mitotic checkpoint serine/threonine kinase Bb.
   
 
 0.985
nup133
Nucleoporin 133.
    
 0.967
aspm
Abnormal spindle microtubule assembly.
   
  
 0.966
ENSCHAP00000001474
Forkhead box M1.
   
 
 0.964
ENSCHAP00000008137
Spindle and kinetochore associated complex subunit 3.
   
 
 0.962
ENSCHAP00000018333
annotation not available
   
 
 0.960
ska1
Spindle and kinetochore associated complex subunit 1.
   
 
 0.957
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.