STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000051402annotation not available (626 aa)    
Predicted Functional Partners:
gart
annotation not available
   
 0.966
rbm8a
RNA binding motif protein 8A.
    
 0.892
ENSCHAP00000037117
annotation not available
    
 0.892
LOC105900893
Protein mago nashi homolog.
    
 0.884
ENSCHAP00000018110
annotation not available
    
 
 0.812
ube2i
Ubiquitin conjugating enzyme E2 I.
   
 
 0.786
LOC105890774
SUMO-conjugating enzyme UBC9-like.
   
 
 0.786
ENSCHAP00000018344
annotation not available
    
 0.779
ENSCHAP00000002546
RAN, member RAS oncogene family.
    
 0.745
ran
RAN, member RAS oncogene family.
    
 0.745
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.