STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000051447Prospero homeobox 1a. (776 aa)    
Predicted Functional Partners:
ENSCHAP00000011378
annotation not available
      
 0.524
vegfc
Vascular endothelial growth factor C.
      
 0.504
sox18
SRY-box transcription factor 18.
   
  
 0.448
ENSCHAP00000006669
Fms-related tyrosine kinase 4.
      
 0.446
ENSCHAP00000050063
Forkhead box P4.
      
 0.444
HHEX
Hematopoietically expressed homeobox.
      
 0.431
ENSCHAP00000022567
annotation not available
  
 
   0.427
fli1
Fli-1 proto-oncogene, ETS transcription factor.
   
 
 0.407
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.