STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000051473Protocadherin 11. (1226 aa)    
Predicted Functional Partners:
ENSCHAP00000027867
Catenin (cadherin-associated protein), alpha-like 1.
    
 0.539
ENSCHAP00000025324
annotation not available
    
 0.509
CTNNB1
Catenin beta 1.
    
 0.509
ctnnd1
Catenin delta 1.
   
 0.498
ARVCF
ARVCF delta catenin family member.
   
 0.498
ENSCHAP00000017703
Catenin (cadherin-associated protein), delta 2a.
   
 0.487
ENSCHAP00000029981
Catenin (cadherin-associated protein), delta 2b.
   
 0.487
ENSCHAP00000056733
Plakophilin 4.
   
 0.487
PKP4
Plakophilin 4.
   
 0.487
ENSCHAP00000008383
Myosin IXB.
    
  0.484
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.