STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000051743SKI family transcriptional corepressor 1b. (732 aa)    
Predicted Functional Partners:
ENSCHAP00000051935
SMAD family member 6b.
  
 
 
 0.461
LOC105906489
Mothers against decapentaplegic homolog 6-like.
  
 
 
 0.453
UNC79
Unc-79 homolog, NALCN channel complex subunit.
      
 0.414
btbd9
BTB domain containing 9.
      
 0.408
ENSCHAP00000053588
Mitogen-activated protein kinase kinase 5.
      
 0.406
ENSCHAP00000007825
NEDD8 ubiquitin like modifier, like.
      
 0.402
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.