STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000051903SMAD family member 6b. (189 aa)    
Predicted Functional Partners:
ENSCHAP00000058127
SMAD specific E3 ubiquitin protein ligase 1.
    
 0.942
ENSCHAP00000016846
SMAD specific E3 ubiquitin protein ligase 2.
    
 0.940
ENSCHAP00000055703
WW domain containing transcription regulator 1.
    
 0.900
SMURF2
SMAD specific E3 ubiquitin protein ligase 2.
    
 0.897
smad1
SMAD family member 1.
   
0.848
LOC105912044
Mothers against decapentaplegic homolog 5.
   
0.848
ENSCHAP00000059394
annotation not available
   
0.848
ENSCHAP00000010165
SMAD family member 2.
   
0.845
ENSCHAP00000026085
Ring finger protein 111.
   
 0.799
ENSCHAP00000032550
Ring finger protein (C3H2C3 type) 6.
   
 0.795
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.