STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000052118Zgc:174917. (303 aa)    
Predicted Functional Partners:
ENSCHAP00000002142
Peroxisomal biogenesis factor 7.
    
 0.832
acaa1
acetyl-CoA acyltransferase 1.
   
 
 0.738
ENSCHAP00000004539
Peroxisomal biogenesis factor 10.
   
 
 0.711
pex13
Peroxisomal biogenesis factor 13.
     
 0.704
agps
Alkylglycerone phosphate synthase.
  
 0.701
pex12
Peroxisomal biogenesis factor 12.
     
 0.681
rps27a
Ribosomal protein S27a.
    
  0.679
ENSCHAP00000022800
Alanine--glyoxylate and serine--pyruvate aminotransferase b.
    
 0.653
agxt
Alanine--glyoxylate and serine--pyruvate aminotransferase.
    
 0.653
ENSCHAP00000019596
Peroxisomal biogenesis factor 5.
    
 0.640
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.