STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chrac1Chromatin accessibility complex subunit 1. (115 aa)    
Predicted Functional Partners:
pole3
DNA polymerase epsilon 3, accessory subunit.
    
 0.998
ENSCHAP00000026944
Bromodomain adjacent to zinc finger domain, 1A.
   
 0.994
nfyb
Nuclear transcription factor Y subunit beta.
   
 0.994
nfya
Nuclear transcription factor Y subunit alpha.
    
 0.994
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 0.982
LOC105893234
Probable global transcription activator SNF2L1.
    
 0.982
ENSCHAP00000022284
Bromodomain adjacent to zinc finger domain, 1B.
   
 0.966
RSF1
Remodeling and spacing factor 1.
     
 0.954
ENSCHAP00000055106
annotation not available
    
 0.934
ENSCHAP00000028913
Bromodomain adjacent to zinc finger domain, 2Ba.
   
 0.878
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.