STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000052473Fibronectin 1b. (2466 aa)    
Predicted Functional Partners:
ENSCHAP00000016980
Fibrinogen beta chain.
   
 0.949
ENSCHAP00000017116
Fibrinogen alpha chain.
    
 0.939
sdc4
Syndecan 4.
    
 0.934
fgg
Fibrinogen gamma chain.
    
  0.934
ENSCHAP00000029637
annotation not available
     
 0.909
itgb6
Integrin subunit beta 6.
   
 
 0.888
itgb8
Integrin subunit beta 8.
   
 
 0.877
itgb5
Integrin subunit beta 5.
   
 
 0.865
ENSCHAP00000023060
Integrin, beta 4.
   
 
0.864
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.864
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.