STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
n6amt1N-6 adenine-specific DNA methyltransferase 1. (224 aa)    
Predicted Functional Partners:
trmt112
tRNA methyltransferase subunit 11-2.
    
 0.999
ENSCHAP00000018625
Si:dkey-145c18.3.
  
 
 0.971
ENSCHAP00000042150
Chromosome 12 open reading frame 65.
  
 
 0.971
ENSCHAP00000058799
Nicotinamide phosphoribosyltransferase b.
  
 
 0.971
ENSCHAP00000000600
Coproporphyrinogen oxidase.
  
 
 0.916
fech
Ferrochelatase.
    
 0.911
shmt2
Serine hydroxymethyltransferase 2.
    
 0.898
ENSCHAP00000001204
Eukaryotic translation termination factor 1b.
   
 0.854
ENSCHAP00000001660
annotation not available
   
 0.854
ENSCHAP00000007726
Eukaryotic translation termination factor 1a.
   
 0.854
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.