STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000052509ATP-binding cassette, sub-family A (ABC1), member 4a. (2288 aa)    
Predicted Functional Partners:
ENSCHAP00000055116
Nuclear receptor subfamily 1, group H, member 3.
    
 0.809
LOC105896373
Apolipoprotein A-IV-like.
    
 0.705
ENSCHAP00000012258
annotation not available
    
 0.705
ENSCHAP00000012278
annotation not available
    
 0.705
LOC105896364
Apolipoprotein A-IV-like.
    
 0.705
ENSCHAP00000061080
ATP-binding cassette, sub-family A (ABC1), member 3b.
  
 
0.689
ENSCHAP00000034308
annotation not available
  
  
 
0.687
LOC105900835
Cytochrome c oxidase assembly protein COX15 homolog.
    
 0.685
ENSCHAP00000052209
Si:ch211-153b23.3.
     
 0.653
ENSCHAP00000028462
ATP-binding cassette, sub-family D (ALD), member 4.
     
 0.637
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.