STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000052723Prune homolog 2 with BCH domain. (325 aa)    
Predicted Functional Partners:
ENSCHAP00000037583
Prune exopolyphosphatase.
 
   
 0.986
atp5f1c
ATP synthase F1 subunit gamma.
    
 0.869
atp5f1d
ATP synthase F1 subunit delta.
    
 0.869
aprt
Adenine phosphoribosyltransferase.
    
 0.868
atp5f1a
methyl-CpG-binding domain protein 2-like.
  
 
 0.836
atp5po
ATP synthase peripheral stalk subunit OSCP.
  
 
 0.835
atp6v1f
ATPase H+ transporting V1 subunit F.
  
 
  0.831
ENSCHAP00000025311
ATPase H+ transporting V0 subunit d1.
    
  0.824
ENSCHAP00000051526
ATPase, H+ transporting, lysosomal, V1 subunit B, member a.
  
 
  0.704
ENSCHAP00000060460
ATPase H+ transporting V1 subunit B2.
  
 
  0.704
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.