STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000052725Coiled-coil domain containing 125. (470 aa)    
Predicted Functional Partners:
ccdc96
Coiled-coil domain containing 96.
      
 0.533
ENSCHAP00000007829
Coiled-coil domain containing 92.
      
 0.529
ENSCHAP00000031533
Coiled-coil domain containing 113.
      
 0.528
polr2b
RNA polymerase II subunit B.
      
 0.526
ENSCHAP00000007888
Transforming, acidic coiled-coil containing protein 1.
      
 0.525
bicdl1
BICD family like cargo adaptor 1.
      
 0.518
ENSCHAP00000000878
RAS-like, family 11, member B.
      
 0.477
ENSCHAP00000021659
annotation not available
      
 0.445
LOC105908379
Coiled-coil domain-containing protein 149-B-like.
      
 0.445
ENSCHAP00000022407
Si:ch211-222n4.2.
      
 0.410
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.