STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tph1Tryptophan hydroxylase 1. (483 aa)    
Predicted Functional Partners:
LOC105890513
Pterin-4-alpha-carbinolamine dehydratase 2-like.
  
 0.963
pcbd1
Pterin-4 alpha-carbinolamine dehydratase 1.
  
 0.959
ddc
Dopa decarboxylase.
   
 0.881
LOC105902744
Indoleamine 2,3-dioxygenase 2-like.
   
 
 0.871
LOC105908699
Dihydropteridine reductase-like.
   
 0.870
LOC105908429
Dihydropteridine reductase-like.
   
 0.870
ENSCHAP00000017397
Tryptophan 2,3-dioxygenase a.
  
 
 0.865
ENSCHAP00000018072
Zgc:153031.
     
 0.828
ENSCHAP00000052633
Dihydrofolate reductase.
     
 0.828
ENSCHAP00000060663
annotation not available
   
 
 0.826
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.