STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vta1Vesicle trafficking 1. (298 aa)    
Predicted Functional Partners:
LOC105894748
Charged multivesicular body protein 5.
   
 0.999
ENSCHAP00000009707
Vacuolar protein sorting 4 homolog A.
   
 0.995
VPS4B
Vacuolar protein sorting-associated protein 4B-like.
   
 0.995
chmp1a
Charged multivesicular body protein 1A.
    
 0.990
chmp1b
Charged multivesicular body protein 1B.
    
 0.988
LOC105893229
Charged multivesicular body protein 1b-like.
    
 0.988
ENSCHAP00000042524
annotation not available
   
 0.984
ENSCHAP00000042451
IST1 factor associated with ESCRT-III.
   
 
 0.979
gch1
GTP cyclohydrolase 1.
   
   0.959
bcas2
BCAS2 pre-mRNA processing factor.
   
   0.956
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.