STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105910603Betaine--homocysteine S-methyltransferase 1-like. (366 aa)    
Predicted Functional Partners:
gart
annotation not available
  
 
 0.928
mars1
methionyl-tRNA synthetase 1.
  
 
 0.894
ENSCHAP00000026988
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.847
LOC105908670
Cystathionine beta-synthase-like.
  
 
 0.824
gldc
Glycine decarboxylase.
  
 
 0.806
aldh7a1
Aldehyde dehydrogenase 7 family member A1.
  
 0.806
shmt2
Serine hydroxymethyltransferase 2.
     
 0.799
ahcy
Adenosylhomocysteinase.
  
 
 0.786
mtr
5-methyltetrahydrofolate-homocysteine methyltransferase.
     
 0.774
ENSCHAP00000012912
Folylpolyglutamate synthase.
   
 
 0.772
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.